PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013632435.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 188aa    MW: 20725.6 Da    PI: 7.0836
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013632435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.51.1e-38151151100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++Cv+apyf aeq +++fa+vhk+FGasn +k+l +lp ++r+da+s+l+yeA ar++dPvyG+vg++++lq+q+++l+ae+
  XP_013632435.1  15 PCGACKFLRRKCVSGCVFAPYFDAEQgTATFAAVHKVFGASNASKMLLRLPLNKRHDAVSTLCYEALARLSDPVYGSVGHLFSLQHQVMNLQAEI 109
                     7***********************9988******************************************************************* PP

          DUF260  95 allkee 100
                     a+++++
  XP_013632435.1 110 AHVQAR 115
                     *99976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.90414116IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-3815113IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MTGNLNGGGR GGEGPCGACK FLRRKCVSGC VFAPYFDAEQ GTATFAAVHK VFGASNASKM  60
LLRLPLNKRH DAVSTLCYEA LARLSDPVYG SVGHLFSLQH QVMNLQAEIA HVQARLSTFQ  120
RFSVIPPKQM QQPPHNNEYP VEQTNLDFAW EEEQLSLAGN ENGEFQELAM QFVSKYLPEV  180
KLPACTFS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00313DAPTransfer from AT2G45410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894981e-155AC189498.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086L12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013632435.11e-140PREDICTED: LOB domain-containing protein 19-like
SwissprotO221321e-93LBD19_ARATH; LOB domain-containing protein 19
TrEMBLA0A0D3BQ331e-140A0A0D3BQ33_BRAOL; Uncharacterized protein
STRINGBra004908.1-P1e-106(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10828359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45410.13e-96LOB domain-containing protein 19